galaxy.datatypes.converters package
===================================

.. automodule:: galaxy.datatypes.converters
   :members:
   :undoc-members:
   :show-inheritance:

Submodules
----------

galaxy.datatypes.converters.bed\_to\_gff\_converter module
----------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.bed_to_gff_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.bgzip module
----------------------------------------

.. automodule:: galaxy.datatypes.converters.bgzip
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.cram\_to\_bam module
------------------------------------------------

.. automodule:: galaxy.datatypes.converters.cram_to_bam
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.fasta\_to\_len module
-------------------------------------------------

.. automodule:: galaxy.datatypes.converters.fasta_to_len
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.fasta\_to\_tabular\_converter module
----------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.fasta_to_tabular_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.fastq\_to\_fqtoc module
---------------------------------------------------

.. automodule:: galaxy.datatypes.converters.fastq_to_fqtoc
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.fastqsolexa\_to\_fasta\_converter module
--------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.fastqsolexa\_to\_qual\_converter module
-------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.fastqsolexa_to_qual_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.gff\_to\_bed\_converter module
----------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.gff_to_bed_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.gff\_to\_interval\_index\_converter module
----------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.gff_to_interval_index_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.interval\_to\_bed\_converter module
---------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.interval_to_bed_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.interval\_to\_bedstrict\_converter module
---------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.interval_to_bedstrict_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.interval\_to\_fli module
----------------------------------------------------

.. automodule:: galaxy.datatypes.converters.interval_to_fli
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.interval\_to\_interval\_index\_converter module
---------------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.interval_to_interval_index_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.interval\_to\_tabix\_converter module
-----------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.interval_to_tabix_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.lped\_to\_fped\_converter module
------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.lped_to_fped_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.lped\_to\_pbed\_converter module
------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.lped_to_pbed_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.maf\_to\_fasta\_converter module
------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.maf_to_fasta_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.maf\_to\_interval\_converter module
---------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.maf_to_interval_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.parquet\_to\_csv\_converter module
--------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.parquet_to_csv_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.pbed\_ldreduced\_converter module
-------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.pbed_ldreduced_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.pbed\_to\_lped\_converter module
------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.pbed_to_lped_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.picard\_interval\_list\_to\_bed6\_converter module
------------------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.pileup\_to\_interval\_index\_converter module
-------------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.pileup_to_interval_index_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.ref\_to\_seq\_taxonomy\_converter module
--------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.ref_to_seq_taxonomy_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.tabular\_csv module
-----------------------------------------------

.. automodule:: galaxy.datatypes.converters.tabular_csv
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.tabular\_to\_dbnsfp module
------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.tabular_to_dbnsfp
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.vcf\_to\_interval\_index\_converter module
----------------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.vcf_to_interval_index_converter
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.vcf\_to\_vcf\_bgzip module
------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.vcf_to_vcf_bgzip
   :members:
   :undoc-members:
   :show-inheritance:

galaxy.datatypes.converters.wiggle\_to\_simple\_converter module
----------------------------------------------------------------

.. automodule:: galaxy.datatypes.converters.wiggle_to_simple_converter
   :members:
   :undoc-members:
   :show-inheritance:
